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Nelly DESPLAT

Canéjan

En résumé

With 10 years of experiences, I want a new opportunity as a computer development engineer that will allow me to apply all the skills and knowledge acquired during my career and learn new skills.

- Programming language : Python, PERL, R, PHP, HTML5, CSS3, Javascript, SQL ,Notions de C++ / C / Java
- Databases : PostgreSQL, MySQL, Oracle
- Framework : AngularJS, Django, Bootstrap
- IDE : PyCharm

Mes compétences :
HTML
MySQL
XML
C/C++
UNIX
SQL
RNA-Seq
JavaScript
R
Python
XSLT
PHP
NGS
PostgreSQL
Java
Perl
CSS
Oracle
Mapping
Plant biology
Genome assembly
Cellular biology
Biochemistry
Resequencing
Pangenome
Bioinformatics
Molecular biology
Transcriptomic
Polymorphism prediction
AngularJS
Django

Entreprises

  • Akema - Développeur Full Stack

    Canéjan 2018 - 2018 Create a web Human Ressources application (GTA, Expense Reports, Time-tracking, Leave Management ...) on the technical platform of Akema.
    Maintenance in operational conditions, evolutions of existing functionalities and creation of new ones.

    I have worked in mode SCRUM (Agile) and I have used Python, Javascript, HTML5, CSS3 and these Framework Django, AngularJS.

  • Institut Bergonié / INSERM - Bioinformatician

    BORDEAUX 2014 - 2017 The program aims at characterizing and understanding the genomic and transcriptional variants of tumors and metastasis in Leiomyosarcoma of a large cohort of more than 100 patients . Data will be mainly generated via NGS technologies (Whole Genome DnaSeq and RNA-seq).

    My work was to create a pipeline (PERL, Python, bash, R scripts) to analyse of this NGS data for human tumors.

    . Developping, usind and continuously improving NGS data analysis pipelines by assembling existing tools and methodologies.
    . Identifying possible weaknesses of public tools and proposing eventual extensions.
    . Creating new scripts to computerize pipeline, and to analyse the data.
    . Analysing and visualization data to present the results in conference.
    . Using cluster calcul with PBS Torque (Bordeaux Mesocenter) to realize the analyse.
    . Using iRODS as data storage for 45 To of project.
    . Using Bickbucket to versioning scripts to share with other implicated persons.

  • Biogemma / LIMAGRAIN - Bioinformatician

    2012 - 2014 My work was created a pipeline (PERL scripts) to analyse of NGS data (resequencing, transcriptomic...), polymorphism prediction, genome assembly for several species (wheat, maize, rapeseed, pea…).

    . Developping, usind and improving NGS data analysis pipelines by assembling existing tools and methodologies.
    . Using cluster calcul with PBS PRO to realize the analyse.
    . Integration and visualisation in Generic Genome Browser (GBrowse)

  • INRA Avignon - Bioinformatician

    Paris 2011 - 2012 The ANR project MAGIC- TomSNP studies genetic basis of diversity criteria of productivity and quality in tomato, species recently sequenced.Genomic resequencing of eight parental lines of MAGIC population, SNP prediction to create necessary tools for genotyping of the population and a set of genetic resources lineages.

    My work was selected, adaptated and integrated of existing tools and programming in Python and PERL missing elements.
    I have been realised of a chain of processing on the data for each parent line through cleaning sequences, alignment with the reference sequence of the tomato, SNP prediction and study of their potential impact, and creation of a consensus sequence.
    I have collaborated to create a FLAGdb++ interface for tomato specie.

  • INRA Orléans - Bioinformatician

    Paris 2008 - 2010 Development and management of databases to store microarray expression and orthology data. Creation of a website link to the databases to allow researchers recording, processing and querying data as part of ANR Génoplante project POPSEC.

    . Elaboration of the specifications.
    . Modelising databases.
    . Creating databases in using PostgreSQL.
    . User management to connect databases.
    . Creation of a website link (SQL, PERL, PHP, HTML, CSS, JavaScript) to the databases to allow researchers recording, processing and querying data.
    . Writing the user manual.

  • INRA Toulouse - Bioinformatician

    Paris 2008 - 2008 Development of a strategy to design PCR degenerate primers from protein sequences in a metagenomic context as part of ANR project.

    . Creating PERL scripts to select PCR primers.
    . Creation of a website link (PERL, HTML, CSS, XML, XSLT, JavaScript, R) for researchers to select and visualize PCR primers.
    . Writing the user manual.

Formations

  • Université Toulouse 3 Paul Sabatier

    Toulouse 2007 - 2008 MSc in Bioinformatics (Master professionnel Bioinformatique)

    Programming language Perl, Python, Java , C, C++
    Web knowledge HTML, CSS, JavaScript, XML, PHP, CGI, XSLT
    Database SQL, MySQL, Oracle, PostgreSQL
    Operating systems Unix/Windows
    Modeling language UML

  • Université Bordeaux 2 Victor Segalen

    Bordeaux 2001 - 2002 MSC in Biology (Master de Biologie Santé (D.E.A.))

    Molecular and Cellular Biology, Biochemistry, Genetic, Plant Biology

Réseau

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